Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Rna Transport (GO:0050658) Genes Targeted by hsa-mir-548g in B-CLL Leukemia Haslinger Cluster 38 Table contains all genes in the B-CLL Leukemia Haslinger cluster number 38. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-548g GO:0050658 10693 CCT6B chaperonin containing TCP1, subunit 6B (zeta 2) [Source:HGNC Symbol;Acc:1621] T 6296 ACSM3 acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522] zzz999 23198 PSME4 proteasome (prosome, macropain) activator subunit 4 [Source:HGNC Symbol;Acc:20635] T 246243 RNASEH1 ribonuclease H1 [Source:HGNC Symbol;Acc:18466] zzz999 81553 FAM49A family with sequence similarity 49, member A [Source:HGNC Symbol;Acc:25373] zzz999 158427 TSTD2 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 [Source:HGNC Symbol;Acc:30087] T 22980 TCF25 transcription factor 25 (basic helix-loop-helix) [Source:HGNC Symbol;Acc:29181] zzz999 9527 GOSR1 golgi SNAP receptor complex member 1 [Source:HGNC Symbol;Acc:4430] P T 5016 OVGP1 oviductal glycoprotein 1, 120kDa [Source:HGNC Symbol;Acc:8524] zzz999 9125 RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) [Source:HGNC Symbol;Acc:10445] zzz999 11193 WBP4 WW domain binding protein 4 (formin binding protein 21) [Source:HGNC Symbol;Acc:12739] zzz999 54726 OTUD4 OTU domain containing 4 [Source:HGNC Symbol;Acc:24949] zzz999 25909 AHCTF1 AT hook containing transcription factor 1 [Source:HGNC Symbol;Acc:24618] zzz999 Yes 8533 COPS3 COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis) [Source:HGNC Symbol;Acc:2239] zzz999 11137 PWP1 PWP1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17015] zzz999 5711 PSMD5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:HGNC Symbol;Acc:9563] zzz999 6047 RNF4 ring finger protein 4 [Source:HGNC Symbol;Acc:10067] T 9488 PIGB phosphatidylinositol glycan anchor biosynthesis, class B [Source:HGNC Symbol;Acc:8959] zzz999 7789 ZXDA zinc finger, X-linked, duplicated A [Source:HGNC Symbol;Acc:13198] zzz999 9486 CHST10 carbohydrate sulfotransferase 10 [Source:HGNC Symbol;Acc:19650] T 3313 HSPA9 heat shock 70kDa protein 9 (mortalin) [Source:HGNC Symbol;Acc:5244] zzz999 22837 COBLL1 COBL-like 1 [Source:HGNC Symbol;Acc:23571] zzz999 3842 TNPO1 transportin 1 [Source:HGNC Symbol;Acc:6401] P T 25983 NGDN neuroguidin, EIF4E binding protein [Source:HGNC Symbol;Acc:20271] zzz999 5394 EXOSC10 exosome component 10 [Source:HGNC Symbol;Acc:9138] zzz999 23062 GGA2 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 [Source:HGNC Symbol;Acc:16064] zzz999 4863 NPAT nuclear protein, ataxia-telangiectasia locus [Source:HGNC Symbol;Acc:7896] T 23438 HARS2 histidyl-tRNA synthetase 2, mitochondrial (putative) [Source:HGNC Symbol;Acc:4817] zzz999 23011 RAB21 RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:18263] zzz999 10564 ARFGEF2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) [Source:HGNC Symbol;Acc:15853] zzz999 9101 USP8 ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:12631] zzz999 4928 NUP98 nucleoporin 98kDa [Source:HGNC Symbol;Acc:8068] T Yes 840 CASP7 caspase 7, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1508] zzz999 51552 RAB14 RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524] P T 10920 COPS8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) [Source:HGNC Symbol;Acc:24335] zzz999 92856 IMP4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) [Source:HGNC Symbol;Acc:30856] zzz999 4841 NONO non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871] zzz999 8495 PPFIBP2 PTPRF interacting protein, binding protein 2 (liprin beta 2) [Source:HGNC Symbol;Acc:9250] zzz999 23190 UBXN4 UBX domain protein 4 [Source:HGNC Symbol;Acc:14860] zzz999 1105 CHD1 chromodomain helicase DNA binding protein 1 [Source:HGNC Symbol;Acc:1915] zzz999 9798 KIAA0174 KIAA0174 [Source:HGNC Symbol;Acc:28977] zzz999 9739 SETD1A SET domain containing 1A [Source:HGNC Symbol;Acc:29010] T 26121 PRPF31 PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:15446] zzz999 26230 TIAM2 T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:11806] zzz999 23352 UBR4 ubiquitin protein ligase E3 component n-recognin 4 [Source:HGNC Symbol;Acc:30313] zzz999 9618 TRAF4 TNF receptor-associated factor 4 [Source:HGNC Symbol;Acc:12034] zzz999 4729 NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717] zzz999 4606 MYBPC2 myosin binding protein C, fast type [Source:HGNC Symbol;Acc:7550] zzz999 10605 PAIP1 poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:16945] T 7247 TSN translin [Source:HGNC Symbol;Acc:12379] T 9256 BZRAP1 benzodiazapine receptor (peripheral) associated protein 1 [Source:HGNC Symbol;Acc:16831] zzz999 1660 DHX9 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Source:HGNC Symbol;Acc:2750] P T 23168 RTF1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28996] T 1850 DUSP8 dual specificity phosphatase 8 [Source:HGNC Symbol;Acc:3074] zzz999 30849 PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 [Source:HGNC Symbol;Acc:8982] zzz999 1185 CLCN6 chloride channel 6 [Source:HGNC Symbol;Acc:2024] T 9541 CIR1 corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:24217] zzz999 5283 PIGH phosphatidylinositol glycan anchor biosynthesis, class H [Source:HGNC Symbol;Acc:8964] zzz999 1659 DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Source:HGNC Symbol;Acc:2749] zzz999 10479 SLC9A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 [Source:HGNC Symbol;Acc:11079] P T 9818 NUPL1 nucleoporin like 1 [Source:HGNC Symbol;Acc:20261] zzz999 Yes 1147 CHUK conserved helix-loop-helix ubiquitous kinase [Source:HGNC Symbol;Acc:1974] T 23522 MYST4 MYST histone acetyltransferase (monocytic leukemia) 4 [Source:HGNC Symbol;Acc:17582] zzz999 25820 ARIH1 ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) [Source:HGNC Symbol;Acc:689] zzz999 5494 PPM1A protein phosphatase, Mg2+/Mn2+ dependent, 1A [Source:HGNC Symbol;Acc:9275] T 7430 EZR ezrin [Source:HGNC Symbol;Acc:12691] T 3720 JARID2 jumonji, AT rich interactive domain 2 [Source:HGNC Symbol;Acc:6196] P T 219333 USP12 ubiquitin specific peptidase 12 [Source:HGNC Symbol;Acc:20485] T 6867 TACC1 transforming, acidic coiled-coil containing protein 1 [Source:HGNC Symbol;Acc:11522] T 10208 USPL1 ubiquitin specific peptidase like 1 [Source:HGNC Symbol;Acc:20294] zzz999 23165 NUP205 nucleoporin 205kDa [Source:HGNC Symbol;Acc:18658] zzz999 Yes 4839 NOP2 NOP2 nucleolar protein homolog (yeast) [Source:HGNC Symbol;Acc:7867] zzz999 23360 FNBP4 formin binding protein 4 [Source:HGNC Symbol;Acc:19752] T 9921 RNF10 ring finger protein 10 [Source:HGNC Symbol;Acc:10055] T 23197 FAF2 Fas associated factor family member 2 [Source:HGNC Symbol;Acc:24666] zzz999 653659 TMEM183A transmembrane protein 183A [Source:HGNC Symbol;Acc:20173] T 7355 SLC35A2 solute carrier family 35 (UDP-galactose transporter), member A2 [Source:HGNC Symbol;Acc:11022] zzz999 8761 PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557] zzz999 51430 C1orf9 chromosome 1 open reading frame 9 [Source:HGNC Symbol;Acc:1240] P T 8702 B4GALT4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 [Source:HGNC Symbol;Acc:927] T 7270 TTF1 transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:12397] zzz999 22863 ATG14 ATG14 autophagy related 14 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19962] zzz999 2617 GARS glycyl-tRNA synthetase [Source:HGNC Symbol;Acc:4162] zzz999 10671 DCTN6 dynactin 6 [Source:HGNC Symbol;Acc:16964] zzz999 9898 UBAP2L ubiquitin associated protein 2-like [Source:HGNC Symbol;Acc:29877] zzz999 4677 NARS asparaginyl-tRNA synthetase [Source:HGNC Symbol;Acc:7643] zzz999 9669 EIF5B eukaryotic translation initiation factor 5B [Source:HGNC Symbol;Acc:30793] zzz999 9360 PPIG peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650] zzz999 6744 SSFA2 sperm specific antigen 2 [Source:HGNC Symbol;Acc:11319] zzz999 11171 STRAP serine/threonine kinase receptor associated protein [Source:HGNC Symbol;Acc:30796] zzz999 10212 DDX39A DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Source:HGNC Symbol;Acc:17821] zzz999 Yes 7551 ZNF3 zinc finger protein 3 [Source:HGNC Symbol;Acc:13089] zzz999 26133 TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein [Source:HGNC Symbol;Acc:16181] zzz999 3267 AGFG1 ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:5175] P T Yes 1665 DHX15 DEAH (Asp-Glu-Ala-His) box polypeptide 15 [Source:HGNC Symbol;Acc:2738] T 10950 BTG3 BTG family, member 3 [Source:HGNC Symbol;Acc:1132] zzz999 9989 PPP4R1 protein phosphatase 4, regulatory subunit 1 [Source:HGNC Symbol;Acc:9320] zzz999 8480 RAE1 RAE1 RNA export 1 homolog (S. pombe) [Source:HGNC Symbol;Acc:9828] zzz999 Yes 22907 DHX30 DEAH (Asp-Glu-Ala-His) box polypeptide 30 [Source:HGNC Symbol;Acc:16716] zzz999 162494 RHBDL3 rhomboid, veinlet-like 3 (Drosophila) [Source:HGNC Symbol;Acc:16502] T 26036 ZNF451 zinc finger protein 451 [Source:HGNC Symbol;Acc:21091] T 6780 STAU1 staufen, RNA binding protein, homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11370] P T 9816 URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28967] T 25940 FAM98A family with sequence similarity 98, member A [Source:HGNC Symbol;Acc:24520] zzz999 54520 CCDC93 coiled-coil domain containing 93 [Source:HGNC Symbol;Acc:25611] T 9762 zzz999 ProSAP-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O60299] zzz999 9785 DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Source:HGNC Symbol;Acc:17211] zzz999 Yes 2071 ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) [Source:HGNC Symbol;Acc:3435] zzz999 204851 HIPK1 homeodomain interacting protein kinase 1 [Source:HGNC Symbol;Acc:19006] T 9821 RB1CC1 RB1-inducible coiled-coil 1 [Source:HGNC Symbol;Acc:15574] zzz999 2180 ACSL1 acyl-CoA synthetase long-chain family member 1 [Source:HGNC Symbol;Acc:3569] T 3091 HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) [Source:HGNC Symbol;Acc:4910] zzz999 6421 SFPQ splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774] T 7709 ZBTB17 zinc finger and BTB domain containing 17 [Source:HGNC Symbol;Acc:12936] zzz999 55627 SMPD4 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) [Source:HGNC Symbol;Acc:32949] zzz999 5250 SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 [Source:HGNC Symbol;Acc:10989] zzz999 157769 FAM91A1 family with sequence similarity 91, member A1 [Source:HGNC Symbol;Acc:26306] P T 8315 BRAP BRCA1 associated protein [Source:HGNC Symbol;Acc:1099] zzz999 5431 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Source:HGNC Symbol;Acc:9188] zzz999 8575 PRKRA protein kinase, interferon-inducible double stranded RNA dependent activator [Source:HGNC Symbol;Acc:9438] zzz999 7159 TP53BP2 tumor protein p53 binding protein, 2 [Source:HGNC Symbol;Acc:12000] zzz999 6950 TCP1 t-complex 1 [Source:HGNC Symbol;Acc:11655] zzz999 998 CDC42 cell division cycle 42 (GTP binding protein, 25kDa) [Source:HGNC Symbol;Acc:1736] P 1213 CLTC clathrin, heavy chain (Hc) [Source:HGNC Symbol;Acc:2092] T 23443 SLC35A3 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 [Source:HGNC Symbol;Acc:11023] zzz999 7073 TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:HGNC Symbol;Acc:11804] T 9583 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:14573] zzz999 10978 CLP1 CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16999] zzz999 729540 RGPD6 RANBP2-like and GRIP domain containing 6 [Source:HGNC Symbol;Acc:32419] zzz999 8509 NDST2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 [Source:HGNC Symbol;Acc:7681] zzz999 8678 BECN1 beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034] zzz999 1453 CSNK1D casein kinase 1, delta [Source:HGNC Symbol;Acc:2452] P T 6832 SUPV3L1 suppressor of var1, 3-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:11471] zzz999 6018 RLF rearranged L-myc fusion [Source:HGNC Symbol;Acc:10025] zzz999 5537 PPP6C protein phosphatase 6, catalytic subunit [Source:HGNC Symbol;Acc:9323] zzz999 54107 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) [Source:HGNC Symbol;Acc:13546] zzz999 9790 BMS1 BMS1 homolog, ribosome assembly protein (yeast) [Source:HGNC Symbol;Acc:23505] T 529 ATP6V1E1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] zzz999 5252 PHF1 PHD finger protein 1 [Source:HGNC Symbol;Acc:8919] zzz999 6103 RPGR retinitis pigmentosa GTPase regulator [Source:HGNC Symbol;Acc:10295] T 10915 TCERG1 transcription elongation regulator 1 [Source:HGNC Symbol;Acc:15630] P T 9631 NUP155 nucleoporin 155kDa [Source:HGNC Symbol;Acc:8063] zzz999 Yes 2956 MSH6 mutS homolog 6 (E. coli) [Source:HGNC Symbol;Acc:7329] zzz999 406 ARNTL aryl hydrocarbon receptor nuclear translocator-like [Source:HGNC Symbol;Acc:701] zzz999 51082 POLR1D polymerase (RNA) I polypeptide D, 16kDa [Source:HGNC Symbol;Acc:20422] zzz999 5903 RANBP2 RAN binding protein 2 [Source:HGNC Symbol;Acc:9848] zzz999 Yes 23210 JMJD6 jumonji domain containing 6 [Source:HGNC Symbol;Acc:19355] T

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